STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000001834Cnn_1N domain-containing protein. (307 aa)    
Predicted Functional Partners:
cenpj
Centromere protein J.
    
 0.951
cdk5rap2
Uncharacterized protein.
 
      0.900
tubg1
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 
 0.743
PLK1
Serine/threonine-protein kinase PLK.
   
 0.717
plk3
Serine/threonine-protein kinase PLK.
   
 0.717
plk2
Serine/threonine-protein kinase PLK.
   
 0.717
ENSPREP00000016893
Uncharacterized protein.
    
 0.702
golga4
Golgin A4.
    
 
 0.695
MZT1
Mitotic spindle organizing protein 1.
    
 0.673
plk4
Polo-like kinase 4 (Drosophila).
   
 0.651
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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