zmat2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

zmat2

Zinc finger, matrin-type 2. (204 aa)

Predicted Functional Partners:

mfap1

0.989

prpf6

0.985

SART1

0.980

lsm7

0.977

txnl4a

0.969

LSM8

0.968

prpf3

0.966

wbp4

0.965

TCERG1

0.962

prpf31

0.959

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM8	SART1	ENSPREP00000008083	ENSPREP00000000100	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	0.975
LSM8	TCERG1	ENSPREP00000008083	ENSPREP00000011692	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Transcription elongation regulator 1.	0.562
LSM8	lsm7	ENSPREP00000008083	ENSPREP00000024760	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
LSM8	mfap1	ENSPREP00000008083	ENSPREP00000026623	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Microfibril associated protein 1.	0.745
LSM8	prpf3	ENSPREP00000008083	ENSPREP00000025518	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.977
LSM8	prpf31	ENSPREP00000008083	ENSPREP00000011399	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.981
LSM8	prpf6	ENSPREP00000008083	ENSPREP00000026633	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.979
LSM8	txnl4a	ENSPREP00000008083	ENSPREP00000026854	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.939
LSM8	wbp4	ENSPREP00000008083	ENSPREP00000027541	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.743
LSM8	zmat2	ENSPREP00000008083	ENSPREP00000001837	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	Zinc finger, matrin-type 2.	0.968
SART1	LSM8	ENSPREP00000000100	ENSPREP00000008083	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.975
SART1	TCERG1	ENSPREP00000000100	ENSPREP00000011692	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Transcription elongation regulator 1.	0.700
SART1	lsm7	ENSPREP00000000100	ENSPREP00000024760	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.973
SART1	mfap1	ENSPREP00000000100	ENSPREP00000026623	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Microfibril associated protein 1.	0.967
SART1	prpf3	ENSPREP00000000100	ENSPREP00000025518	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	PRP3 pre-mRNA processing factor 3 homolog (yeast).	0.995
SART1	prpf31	ENSPREP00000000100	ENSPREP00000011399	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	PRP31 pre-mRNA processing factor 31 homolog (yeast).	0.995
SART1	prpf6	ENSPREP00000000100	ENSPREP00000026633	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).	0.998
SART1	txnl4a	ENSPREP00000000100	ENSPREP00000026854	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.949
SART1	wbp4	ENSPREP00000000100	ENSPREP00000027541	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Uncharacterized protein.	0.801
SART1	zmat2	ENSPREP00000000100	ENSPREP00000001837	Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.	Zinc finger, matrin-type 2.	0.980