acaca protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

acaca

Acetyl-CoA carboxylase alpha. (2251 aa)

Predicted Functional Partners:

fasn

0.992

mcat

0.956

prkaa2

0.949

prkaa1

0.949

acat2

0.946

acat1

0.946

PRKAB2

0.944

LOC103469702

0.944

LOC103468105

0.940

acss2

0.940

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103468105	acaca	ENSPREP00000002688	ENSPREP00000001848	Acyl-CoA synthetase short chain family member 2.	Acetyl-CoA carboxylase alpha.	0.940
LOC103468105	acat1	ENSPREP00000002688	ENSPREP00000015486	Acyl-CoA synthetase short chain family member 2.	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.946
LOC103468105	acat2	ENSPREP00000002688	ENSPREP00000008323	Acyl-CoA synthetase short chain family member 2.	Acetyl-CoA acetyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.946
LOC103468105	acss2	ENSPREP00000002688	ENSPREP00000015051	Acyl-CoA synthetase short chain family member 2.	Acetyl-coenzyme A synthetase.	0.901
LOC103469702	PRKAB2	ENSPREP00000029962	ENSPREP00000023006	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.901
LOC103469702	acaca	ENSPREP00000029962	ENSPREP00000001848	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	Acetyl-CoA carboxylase alpha.	0.944
LOC103469702	prkaa1	ENSPREP00000029962	ENSPREP00000032104	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	Non-specific serine/threonine protein kinase.	0.989
LOC103469702	prkaa2	ENSPREP00000029962	ENSPREP00000031267	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	Non-specific serine/threonine protein kinase.	0.989
PRKAB2	LOC103469702	ENSPREP00000023006	ENSPREP00000029962	Protein kinase AMP-activated non-catalytic subunit beta 2.	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	0.901
PRKAB2	acaca	ENSPREP00000023006	ENSPREP00000001848	Protein kinase AMP-activated non-catalytic subunit beta 2.	Acetyl-CoA carboxylase alpha.	0.944
PRKAB2	prkaa1	ENSPREP00000023006	ENSPREP00000032104	Protein kinase AMP-activated non-catalytic subunit beta 2.	Non-specific serine/threonine protein kinase.	0.989
PRKAB2	prkaa2	ENSPREP00000023006	ENSPREP00000031267	Protein kinase AMP-activated non-catalytic subunit beta 2.	Non-specific serine/threonine protein kinase.	0.989
acaca	LOC103468105	ENSPREP00000001848	ENSPREP00000002688	Acetyl-CoA carboxylase alpha.	Acyl-CoA synthetase short chain family member 2.	0.940
acaca	LOC103469702	ENSPREP00000001848	ENSPREP00000029962	Acetyl-CoA carboxylase alpha.	Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.	0.944
acaca	PRKAB2	ENSPREP00000001848	ENSPREP00000023006	Acetyl-CoA carboxylase alpha.	Protein kinase AMP-activated non-catalytic subunit beta 2.	0.944
acaca	acat1	ENSPREP00000001848	ENSPREP00000015486	Acetyl-CoA carboxylase alpha.	Acetyl-CoA acetyltransferase 1; Belongs to the thiolase-like superfamily. Thiolase family.	0.946
acaca	acat2	ENSPREP00000001848	ENSPREP00000008323	Acetyl-CoA carboxylase alpha.	Acetyl-CoA acetyltransferase 2; Belongs to the thiolase-like superfamily. Thiolase family.	0.946
acaca	acss2	ENSPREP00000001848	ENSPREP00000015051	Acetyl-CoA carboxylase alpha.	Acetyl-coenzyme A synthetase.	0.940
acaca	fasn	ENSPREP00000001848	ENSPREP00000005709	Acetyl-CoA carboxylase alpha.	Coiled-coil domain containing 57.	0.992
acaca	mcat	ENSPREP00000001848	ENSPREP00000033926	Acetyl-CoA carboxylase alpha.	Malonyl CoA:ACP acyltransferase (mitochondrial).	0.956