STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103469296ArfGAP with dual PH domains 2. (417 aa)    
Predicted Functional Partners:
utp6
UTP6 small subunit processome component.
      
 0.605
crlf3
Cytokine receptor-like factor 3.
      
 0.593
tefm
Transcription elongation factor, mitochondrial.
      
 0.493
LOC103479097
Uncharacterized protein.
    
 
 0.433
arfgap1
ADP-ribosylation factor GTPase activating protein 1.
    
 
 0.429
gak
Cyclin G associated kinase.
   
 
 0.415
Sh3yl1
SH3 and SYLF domain containing 1.
    
 
 0.413
rps6kc1
Ribosomal protein S6 kinase polypeptide 1.
      
 0.411
rps6kl1
Ribosomal protein S6 kinase-like 1.
      
 0.402
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.