STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mixl1Mix paired-like homeobox. (305 aa)    
Predicted Functional Partners:
LOC103471993
T-box transcription factor Ta.
   
 0.887
tbxt
T-box transcription factor Tb.
   
 0.869
sox17
SRY-box transcription factor 17.
   
 0.824
LOC103472663
Eomesodermin homolog a.
   
 0.800
foxa2
Forkhead box A2.
   
 
 0.798
ENSPREP00000009268
TGF_BETA_2 domain-containing protein.
     
 0.777
LOC103482434
Forkhead box H1.
   
 0.775
LOC103466925
GATA binding protein 5.
     
 0.774
LOC103456940
SRY-box transcription factor 32.
   
 0.772
tbr1
T-box brain transcription factor 1b.
   
 0.760
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.