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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466238Uncharacterized protein. (1160 aa)    
Predicted Functional Partners:
ENSPREP00000026061
Excision repair cross-complementation group 6-like.
      
 0.595
ENSPREP00000030719
Uncharacterized protein.
      
 0.549
LOC103456765
Diphthamide biosynthesis 3.
      
 0.540
LOC103468695
G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family.
      
 0.532
dph2
2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.
      
 0.528
dph5
Diphthamide biosynthesis 5.
      
 0.474
LOC103467572
Protein tyrosine phosphatase domain containing 1b.
      
 0.473
ptpdc1
Protein tyrosine phosphatase domain containing 1a.
      
 0.473
ercc6l2
Excision repair cross-complementation group 6-like 2.
      
 0.471
sclt1
Sodium channel and clathrin linker 1.
      
 0.442
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.