STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466238Uncharacterized protein. (1160 aa)    
Predicted Functional Partners:
ENSPREP00000026061
Excision repair cross-complementation group 6-like.
      
 0.833
ENSPREP00000030719
Uncharacterized protein.
      
 0.765
LOC103468695
G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family.
      
 0.697
LOC103456765
Diphthamide biosynthesis 3.
      
 0.697
dph2
2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.
      
 0.674
LOC103467572
Protein tyrosine phosphatase domain containing 1b.
      
 0.649
ptpdc1
Protein tyrosine phosphatase domain containing 1a.
      
 0.649
ENSPREP00000015141
DUF4708 domain-containing protein.
      
 0.633
fam133b
Family with sequence similarity 133 member B.
      
 0.614
lg2h3orf70
Zgc:162707.
      
 0.614
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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