STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478574Homeobox A13b. (286 aa)    
Predicted Functional Partners:
ENSPREP00000014536
Uncharacterized protein.
      
 0.646
nr0b2
Nuclear receptor subfamily 0, group B, member 2a.
    
 
 0.480
cnst
Consortin_C domain-containing protein.
      
 0.472
LOC103479586
Pre-B-cell leukemia homeobox 1a.
    
 
 0.400
pbx4
Pre-B-cell leukemia transcription factor 4.
    
 
 0.400
pbx3
Homeobox domain-containing protein.
    
 
 0.400
pbx1
Homeobox domain-containing protein.
    
 
 0.400
LOC103477587
Pre-B-cell leukemia homeobox 2.
    
 
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.