STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tpcn1Two pore segment channel 1. (832 aa)    
Predicted Functional Partners:
LOC103456801
Uncharacterized protein.
     
 0.901
Unc79
Uncharacterized protein.
   
 0.878
iqcd
Uncharacterized protein.
      
 0.603
mettl27
Methyltransferase like 27.
      
 0.603
ENSPREP00000024905
Methyltransf_25 domain-containing protein.
      
 0.603
IFT122
Intraflagellar transport 122.
   
 0.564
wdr35
WD repeat-containing protein 35.
   
 0.563
slc38a7
Solute carrier family 38 member 7.
      
 0.531
jpt2
Jupiter microtubule associated homolog 2.
   
  
 0.517
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
   
 0.514
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.