STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LxnSpondin domain-containing protein. (87 aa)    
Predicted Functional Partners:
LOC103465673
Carboxypeptidase A1.
    
 
 0.611
CPA1
Carboxypeptidase A1.
    
 
 0.611
LOC103465733
Carboxypeptidase A4.
    
 
 0.611
LOC103466184
ATP/GTP binding protein-like 2.
    
 
 0.594
ENSPREP00000030322
Uncharacterized protein.
      
 0.474
tm7sf3
Transmembrane 7 superfamily member 3.
      
 0.470
oma1
OMA1 zinc metallopeptidase.
      
 0.452
agtpbp1
ATP/GTP binding protein 1.
    
 
 0.420
LOC103472693
Protein S100; Belongs to the S-100 family.
      
 0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.