ENSPREP00000001895 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000001895

Piezo_RRas_bdg domain-containing protein. (569 aa)

Predicted Functional Partners:

ENSPREP00000001831

0.936

tipin

0.797

timeless

0.786

mcm4

0.774

chek2

0.765

wdhd1

0.760

cdc45

0.755

atr

0.692

mcm9

0.686

mcm2

0.686

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000001831	ENSPREP00000001895	ENSPREP00000001831	ENSPREP00000001895	Uncharacterized protein.	Piezo_RRas_bdg domain-containing protein.	0.936
ENSPREP00000001831	atr	ENSPREP00000001831	ENSPREP00000016955	Uncharacterized protein.	ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.	0.692
ENSPREP00000001831	cdc45	ENSPREP00000001831	ENSPREP00000017327	Uncharacterized protein.	CDC45 cell division cycle 45 homolog (S. cerevisiae).	0.755
ENSPREP00000001831	chek2	ENSPREP00000001831	ENSPREP00000024020	Uncharacterized protein.	Checkpoint kinase 2.	0.765
ENSPREP00000001831	mcm2	ENSPREP00000001831	ENSPREP00000033565	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.686
ENSPREP00000001831	mcm4	ENSPREP00000001831	ENSPREP00000012626	Uncharacterized protein.	DNA helicase; Belongs to the MCM family.	0.774
ENSPREP00000001831	mcm9	ENSPREP00000001831	ENSPREP00000031095	Uncharacterized protein.	Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family.	0.686
ENSPREP00000001831	timeless	ENSPREP00000001831	ENSPREP00000021439	Uncharacterized protein.	Timeless circadian clock.	0.786
ENSPREP00000001831	tipin	ENSPREP00000001831	ENSPREP00000012116	Uncharacterized protein.	TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.797
ENSPREP00000001831	wdhd1	ENSPREP00000001831	ENSPREP00000027414	Uncharacterized protein.	WD repeat and HMG-box DNA binding protein 1.	0.760
ENSPREP00000001895	ENSPREP00000001831	ENSPREP00000001895	ENSPREP00000001831	Piezo_RRas_bdg domain-containing protein.	Uncharacterized protein.	0.936
ENSPREP00000001895	atr	ENSPREP00000001895	ENSPREP00000016955	Piezo_RRas_bdg domain-containing protein.	ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.	0.692
ENSPREP00000001895	cdc45	ENSPREP00000001895	ENSPREP00000017327	Piezo_RRas_bdg domain-containing protein.	CDC45 cell division cycle 45 homolog (S. cerevisiae).	0.755
ENSPREP00000001895	chek2	ENSPREP00000001895	ENSPREP00000024020	Piezo_RRas_bdg domain-containing protein.	Checkpoint kinase 2.	0.765
ENSPREP00000001895	mcm2	ENSPREP00000001895	ENSPREP00000033565	Piezo_RRas_bdg domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.686
ENSPREP00000001895	mcm4	ENSPREP00000001895	ENSPREP00000012626	Piezo_RRas_bdg domain-containing protein.	DNA helicase; Belongs to the MCM family.	0.774
ENSPREP00000001895	mcm9	ENSPREP00000001895	ENSPREP00000031095	Piezo_RRas_bdg domain-containing protein.	Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family.	0.686
ENSPREP00000001895	timeless	ENSPREP00000001895	ENSPREP00000021439	Piezo_RRas_bdg domain-containing protein.	Timeless circadian clock.	0.786
ENSPREP00000001895	tipin	ENSPREP00000001895	ENSPREP00000012116	Piezo_RRas_bdg domain-containing protein.	TIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family.	0.797
ENSPREP00000001895	wdhd1	ENSPREP00000001895	ENSPREP00000027414	Piezo_RRas_bdg domain-containing protein.	WD repeat and HMG-box DNA binding protein 1.	0.760