LOC103460486 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103460486

Upstream binding transcription factor, like. (701 aa)

Predicted Functional Partners:

polr1e

0.902

polr1a

0.881

polr1b

0.833

Sirt7

0.811

taf1b

0.800

rrn3

0.767

twistnb

0.697

LOC103475151

0.686

taf6l

0.685

gtf2h1

0.683

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103460486	LOC103475151	ENSPREP00000001918	ENSPREP00000028018	Upstream binding transcription factor, like.	Uncharacterized protein.	0.686
LOC103460486	Sirt7	ENSPREP00000001918	ENSPREP00000000575	Upstream binding transcription factor, like.	Uncharacterized protein.	0.811
LOC103460486	gtf2h1	ENSPREP00000001918	ENSPREP00000019946	Upstream binding transcription factor, like.	General transcription factor IIH, polypeptide 1.	0.683
LOC103460486	polr1a	ENSPREP00000001918	ENSPREP00000003406	Upstream binding transcription factor, like.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.881
LOC103460486	polr1b	ENSPREP00000001918	ENSPREP00000004067	Upstream binding transcription factor, like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.833
LOC103460486	polr1e	ENSPREP00000001918	ENSPREP00000013941	Upstream binding transcription factor, like.	RNA polymerase I subunit E.	0.902
LOC103460486	rrn3	ENSPREP00000001918	ENSPREP00000016699	Upstream binding transcription factor, like.	RRN3 homolog, RNA polymerase I transcription factor.	0.767
LOC103460486	taf1b	ENSPREP00000001918	ENSPREP00000021905	Upstream binding transcription factor, like.	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	0.800
LOC103460486	taf6l	ENSPREP00000001918	ENSPREP00000005933	Upstream binding transcription factor, like.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.685
LOC103460486	twistnb	ENSPREP00000001918	ENSPREP00000004888	Upstream binding transcription factor, like.	Uncharacterized protein.	0.697
LOC103475151	LOC103460486	ENSPREP00000028018	ENSPREP00000001918	Uncharacterized protein.	Upstream binding transcription factor, like.	0.686
LOC103475151	gtf2h1	ENSPREP00000028018	ENSPREP00000019946	Uncharacterized protein.	General transcription factor IIH, polypeptide 1.	0.562
LOC103475151	polr1a	ENSPREP00000028018	ENSPREP00000003406	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
LOC103475151	polr1b	ENSPREP00000028018	ENSPREP00000004067	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
LOC103475151	polr1e	ENSPREP00000028018	ENSPREP00000013941	Uncharacterized protein.	RNA polymerase I subunit E.	0.999
LOC103475151	rrn3	ENSPREP00000028018	ENSPREP00000016699	Uncharacterized protein.	RRN3 homolog, RNA polymerase I transcription factor.	0.959
LOC103475151	taf1b	ENSPREP00000028018	ENSPREP00000021905	Uncharacterized protein.	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	0.588
LOC103475151	twistnb	ENSPREP00000028018	ENSPREP00000004888	Uncharacterized protein.	Uncharacterized protein.	0.999
Sirt7	LOC103460486	ENSPREP00000000575	ENSPREP00000001918	Uncharacterized protein.	Upstream binding transcription factor, like.	0.811
Sirt7	polr1a	ENSPREP00000000575	ENSPREP00000003406	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.905