STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpra1Transmembrane protein, adipocyte asscociated 1. (384 aa)    
Predicted Functional Partners:
rspry1
Ring finger and SPRY domain containing 1.
      
 0.549
trpa1
Transient receptor potential cation channel, subfamily A, member 1b; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.549
GTF3C1
General transcription factor IIIC subunit 1.
      
 0.524
nudt13
Nudix (nucleoside diphosphate linked moiety X)-type motif 13.
      
 0.477
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.475
LOC103472857
Coiled-coil domain containing 106b.
      
 0.471
fbxo9
F-box protein 9.
      
 0.470
nudt12
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
      
 0.420
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.