STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103473505Fibrillar collagen NC1 domain-containing protein. (1158 aa)    
Predicted Functional Partners:
LOC108166264
Uncharacterized protein.
 
    
0.853
ENSPREP00000009031
LAM_G_DOMAIN domain-containing protein.
 
   
 0.720
ENSPREP00000000054
LAM_G_DOMAIN domain-containing protein.
 
   
 0.700
col6a1
Collagen, type VI, alpha 1.
  
0.500
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
   
 0.476
LOC103476145
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.
   
 0.476
LOC103462811
Protein disulfide-isomerase.
    
  0.464
p4hb
Protein disulfide-isomerase.
    
  0.464
LOC103478928
Collagen, type XV, alpha 1b.
  
 
0.463
LOC103461657
Uncharacterized protein.
  
0.446
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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