STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103473505Fibrillar collagen NC1 domain-containing protein. (1158 aa)    
Predicted Functional Partners:
LOC108166264
Uncharacterized protein.
 
   
0.855
ENSPREP00000009031
LAM_G_DOMAIN domain-containing protein.
 
   
 0.700
ENSPREP00000000054
LAM_G_DOMAIN domain-containing protein.
 
   
 0.679
col22a1
VWFA domain-containing protein.
  
0.521
LOC103472590
Uncharacterized protein.
  
  
0.482
pcolce2
Procollagen C-endopeptidase enhancer 2b.
   
 0.478
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
 0.459
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
 0.459
ppib
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.455
LOC103461657
Uncharacterized protein.
  
0.451
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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