STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475898Roundabout guidance receptor 1. (1245 aa)    
Predicted Functional Partners:
ENSPREP00000001923
Ig-like domain-containing protein.
 
      0.891
LOC103471805
Slit homolog 3 (Drosophila).
   
 0.731
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
      
 0.690
Dph6
Diphthine--ammonia ligase; Amidase that catalyzes the last step of diphthamide biosynthesis using ammonium and ATP.
      
 0.685
slit2
Slit homolog 2 (Drosophila).
   
 0.684
slit1
Slit homolog 1a (Drosophila).
   
 0.684
LOC103470154
Slit homolog 1b (Drosophila).
   
 0.684
tubgcp5
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.673
nyx
Nyctalopin.
   
 0.660
LOC103475531
Glutamate receptor, ionotropic, kainate 1a.
      
 0.645
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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