STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhsl1NHS-like 1b. (1628 aa)    
Predicted Functional Partners:
lrfn5
Leucine rich repeat and fibronectin type III domain containing 5a.
      
 0.642
celsr2
Cadherin, EGF LAG seven-pass G-type receptor 2; Belongs to the G-protein coupled receptor 2 family.
      
 0.560
mdga1
MAM domain containing glycosylphosphatidylinositol anchor 1.
      
 0.553
MDGA2
MAM domain containing glycosylphosphatidylinositol anchor 2.
      
 0.475
PRAG1
PEAK1 related, kinase-activating pseudokinase 1.
  
     0.436
ENSPREP00000032937
SH3 domain-containing protein.
    
 
 0.415
ENSPREP00000027093
Uncharacterized protein.
    
 
 0.401
LOC103473071
Thyroid hormone receptor associated protein 3b.
  
     0.400
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.