STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itchE3 ubiquitin-protein ligase. (840 aa)    
Predicted Functional Partners:
LOC103473440
Notch receptor 1a.
    
 0.967
notch1
Notch receptor 1b.
    
 0.967
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.937
cflar
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 
 0.928
LOC103468742
Notch receptor 3.
    
 0.924
LOC103463625
Notch receptor 2.
    
 0.924
LOC103474976
Spartin b.
    
 
 0.915
rps27a
Ribosomal protein S27a.
    
  0.914
txnip
Thioredoxin interacting protein.
    
 
 0.910
LOC103464828
E3 ubiquitin-protein ligase.
  
  
 
0.901
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.