STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc17a5Solute carrier family 17 member 5. (484 aa)    
Predicted Functional Partners:
LOC103472996
Si:ch1073-513e17.1.
  
  
 
0.903
LOC103472577
Uncharacterized protein.
   
 
 0.710
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.710
ddx43
DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family.
    
 
 0.685
LOC103476466
Potassium voltage-gated channel, KQT-like subfamily, member 5a; Belongs to the potassium channel family.
      
 0.681
LOC103463080
Potassium voltage-gated channel, KQT-like subfamily, member 5b; Belongs to the potassium channel family.
      
 0.681
wdfy2
WD repeat and FYVE domain containing 2.
      
 0.529
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.500
EEF1A1
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
      
 0.474
rims1
Regulating synaptic membrane exocytosis 1a.
   
 
 0.474
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.