slc17a5 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

slc17a5

Solute carrier family 17 member 5. (484 aa)

Predicted Functional Partners:

LOC103472996

0.903

slc39a7

0.718

RIMS2

0.655

LOC103472577

0.611

HECTD4

0.601

EVC

0.595

LOC103476466

0.584

LOC103463080

0.584

brap

0.583

gga3

0.580

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EVC	HECTD4	ENSPREP00000001549	ENSPREP00000012243	EvC ciliary complex subunit 1.	HECT domain E3 ubiquitin protein ligase 4.	0.924
EVC	LOC103472996	ENSPREP00000001549	ENSPREP00000012307	EvC ciliary complex subunit 1.	Si:ch1073-513e17.1.	0.595
EVC	brap	ENSPREP00000001549	ENSPREP00000024282	EvC ciliary complex subunit 1.	BRCA1 associated protein.	0.924
EVC	gga3	ENSPREP00000001549	ENSPREP00000024595	EvC ciliary complex subunit 1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.920
EVC	slc17a5	ENSPREP00000001549	ENSPREP00000001994	EvC ciliary complex subunit 1.	Solute carrier family 17 member 5.	0.595
HECTD4	EVC	ENSPREP00000012243	ENSPREP00000001549	HECT domain E3 ubiquitin protein ligase 4.	EvC ciliary complex subunit 1.	0.924
HECTD4	LOC103472996	ENSPREP00000012243	ENSPREP00000012307	HECT domain E3 ubiquitin protein ligase 4.	Si:ch1073-513e17.1.	0.601
HECTD4	brap	ENSPREP00000012243	ENSPREP00000024282	HECT domain E3 ubiquitin protein ligase 4.	BRCA1 associated protein.	0.921
HECTD4	gga3	ENSPREP00000012243	ENSPREP00000024595	HECT domain E3 ubiquitin protein ligase 4.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.921
HECTD4	slc17a5	ENSPREP00000012243	ENSPREP00000001994	HECT domain E3 ubiquitin protein ligase 4.	Solute carrier family 17 member 5.	0.601
LOC103463080	slc17a5	ENSPREP00000005917	ENSPREP00000001994	Potassium voltage-gated channel, KQT-like subfamily, member 5b; Belongs to the potassium channel family.	Solute carrier family 17 member 5.	0.584
LOC103472577	LOC103472996	ENSPREP00000023069	ENSPREP00000012307	Uncharacterized protein.	Si:ch1073-513e17.1.	0.611
LOC103472577	RIMS2	ENSPREP00000023069	ENSPREP00000023895	Uncharacterized protein.	Regulating synaptic membrane exocytosis 2.	0.609
LOC103472577	slc17a5	ENSPREP00000023069	ENSPREP00000001994	Uncharacterized protein.	Solute carrier family 17 member 5.	0.611
LOC103472996	EVC	ENSPREP00000012307	ENSPREP00000001549	Si:ch1073-513e17.1.	EvC ciliary complex subunit 1.	0.595
LOC103472996	HECTD4	ENSPREP00000012307	ENSPREP00000012243	Si:ch1073-513e17.1.	HECT domain E3 ubiquitin protein ligase 4.	0.601
LOC103472996	LOC103472577	ENSPREP00000012307	ENSPREP00000023069	Si:ch1073-513e17.1.	Uncharacterized protein.	0.611
LOC103472996	RIMS2	ENSPREP00000012307	ENSPREP00000023895	Si:ch1073-513e17.1.	Regulating synaptic membrane exocytosis 2.	0.624
LOC103472996	brap	ENSPREP00000012307	ENSPREP00000024282	Si:ch1073-513e17.1.	BRCA1 associated protein.	0.583
LOC103472996	gga3	ENSPREP00000012307	ENSPREP00000024595	Si:ch1073-513e17.1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a.	0.580