STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
casp8ap2Uncharacterized protein. (1829 aa)    
Predicted Functional Partners:
LOC103474391
LisH domain-containing protein.
   
 
 0.569
lsm11
LSM11, U7 small nuclear RNA associated.
      
 0.549
LOC103478931
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 
 0.480
LOC103459939
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
 
 0.480
kctd2
Potassium channel tetramerization domain containing 2.
    
 0.466
sumo1
Small ubiquitin like modifier 1.
    
  0.463
prr36
Uncharacterized protein.
  
     0.460
dscc1
DNA replication and sister chromatid cohesion 1.
      
 0.457
pias4
Protein inhibitor of activated STAT, 4a.
    
  0.451
LOC103456580
Uncharacterized protein.
  
    0.451
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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