STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474670EMI domain-containing protein. (435 aa)    
Predicted Functional Partners:
mrpl45
Mitochondrial ribosomal protein L45.
      
 0.537
pofut2
Protein O-fucosyltransferase 2.
     
 0.536
trappc2
Trafficking protein particle complex 2.
     
 0.522
ENSPREP00000031340
annotation not available
  
     0.515
ENSPREP00000027401
Uncharacterized protein.
  
     0.513
serpinh1
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
    
 0.485
LOC103476145
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.
    
 0.485
nup43
Nucleoporin 43.
     
 0.480
ENSPREP00000013925
Uncharacterized protein.
  
     0.455
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
      
 0.447
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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