STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467749Uncharacterized protein. (185 aa)    
Predicted Functional Partners:
LOC103473427
Rap guanine nucleotide exchange factor (GEF) 1b.
    
 0.982
braf
B-Raf proto-oncogene, serine/threonine kinase.
    
 0.979
afdn
Afadin, adherens junction formation factor a.
    
 0.975
krit1
KRIT1 ankyrin repeat containing.
    
 0.971
rapgef6
Rap guanine nucleotide exchange factor (GEF) 6.
    
 0.948
LOC103478036
Ras interacting protein 1.
    
 0.942
radil
Ras association and DIL domains.
    
 0.936
LOC103469444
Si:ch73-281f12.4.
    
 0.936
LOC103481932
Si:ch211-176g6.2.
    
 0.936
LOC103471253
Mitogen-activated protein kinase.
   
 0.929
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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