STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103465658Uncharacterized protein. (574 aa)    
Predicted Functional Partners:
cdhr2
Uncharacterized protein.
  
0.851
Cdh23
Uncharacterized protein.
   
0.831
ush1c
Usher syndrome 1C.
   
 
 0.606
ENSPREP00000002838
LHFPL tetraspan subfamily member 4a.
   
 0.552
LOC103464905
LHFPL tetraspan subfamily member 5a.
   
 0.552
LOC103466396
Uncharacterized protein.
   
 0.552
Lhfpl3
LHFPL tetraspan subfamily member 3.
   
 0.552
lhfpl5
LHFPL tetraspan subfamily member 5b.
   
 0.552
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.510
LOC103465321
Junction plakoglobin a.
    
 0.500
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.