STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000002057Stromal interaction molecule 1b. (497 aa)    
Predicted Functional Partners:
LOC103473725
ORAI calcium release-activated calcium modulator 1b.
    
 0.800
LOC103476316
ORAI calcium release-activated calcium modulator 2.
    
 0.798
ENSPREP00000015609
ORAI calcium release-activated calcium modulator 1a.
   
 0.786
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
    
 0.764
stard3
StAR-related lipid transfer (START) domain containing 3.
   
  
 0.564
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
      
 0.553
snx13
Sorting nexin 13.
      
 0.550
LOC103463624
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
    
 
 0.519
Itpr3
MIR domain-containing protein.
    
 0.518
ENSPREP00000007384
Ion_trans domain-containing protein.
    
 0.518
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.