STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyw5tRNA-yW synthesizing protein 5. (260 aa)    
Predicted Functional Partners:
trmt12
tRNA methyltransferase 12 homolog.
 
    
 0.762
LOC103475137
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
  
   
 0.643
tyw3
tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).
      
 0.570
JMJD8
Jumonji domain containing 8.
      
 0.549
NPAS3
Neuronal PAS domain protein 3.
    
 0.548
ENSPREP00000009170
Endothelial PAS domain protein 1b.
    
 0.548
hif1a
Hypoxia inducible factor 1 subunit alpha a.
    
 0.548
LOC103475214
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.548
Npas1
Neuronal PAS domain protein 1.
    
 0.548
trmt5
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
   
  
 0.487
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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