STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cux1Cut-like homeobox 1b. (671 aa)    
Predicted Functional Partners:
ENSPREP00000020758
One cut domain family member.
 
      0.900
satb2
SATB homeobox 2.
    
 
 0.608
znf451
Zinc finger protein 451.
    
 
 0.590
tbr1
T-box brain transcription factor 1b.
    
 
 0.565
fam110b
Uncharacterized protein.
      
 0.538
gosr1
Golgi SNAP receptor complex member 1.
    
 0.529
LOC103475643
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.515
wdr53
WD repeat domain 53.
      
 0.510
nes
IF rod domain-containing protein; Belongs to the intermediate filament family.
      
 0.509
RELN
Reelin.
      
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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