STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tdrpSi:ch211-225h24.2. (197 aa)    
Predicted Functional Partners:
fbxo38
F-box protein 38.
      
 0.922
rassf9
Ras association domain family member 9.
      
 0.589
spata2
Spermatogenesis associated 2.
      
 0.580
smoc2
SPARC related modular calcium binding 2.
      
 0.577
smoc1
SPARC related modular calcium binding 1.
      
 0.577
epdr1
Ependymin related 1.
      
 0.567
klhl5
Kelch-like family member 5.
      
 0.536
LOC103471390
Kelch-like family member 4.
      
 0.536
terb1
Telomere repeat binding bouquet formation protein 1.
      
 0.530
ENSPREP00000027592
Enolase 4.
      
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.