STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103474022Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1192 aa)    
Predicted Functional Partners:
LOC103479551
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
    
 0.490
TMEM30A
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
    
 0.490
LOC103458601
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
    
 0.490
LOC103459948
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
    
 0.486
tjp2
Tight junction protein 2a (zona occludens 2); Belongs to the MAGUK family.
      
 0.473
ENSPREP00000017751
Dynein_attach_N domain-containing protein.
   
 0.466
atp9b
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
   
 0.466
ATP9A
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
   
 0.466
sec63
SEC63 homolog, protein translocation regulator.
   
 
 0.418
dusp8
Dual specificity phosphatase 8a.
    
 
 0.407
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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