mospd2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mospd2

Motile sperm domain containing 2. (523 aa)

Predicted Functional Partners:

stard3

0.938

ENSPREP00000020363

0.763

gpn3

0.758

LOC103477798

0.749

map3k5

0.749

mpzl2

0.724

CERT1

0.715

LOC103473286

0.715

ENSPREP00000034346

0.678

DDX41

0.664

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CERT1	mospd2	ENSPREP00000004969	ENSPREP00000002135	Ceramide transporter 1.	Motile sperm domain containing 2.	0.715
CERT1	stard3	ENSPREP00000004969	ENSPREP00000016275	Ceramide transporter 1.	StAR-related lipid transfer (START) domain containing 3.	0.567
DDX41	mospd2	ENSPREP00000007803	ENSPREP00000002135	DEAD-box helicase 41.	Motile sperm domain containing 2.	0.664
ENSPREP00000020363	mospd2	ENSPREP00000020363	ENSPREP00000002135	GATA-type domain-containing protein.	Motile sperm domain containing 2.	0.763
ENSPREP00000034346	mospd2	ENSPREP00000034346	ENSPREP00000002135	Uncharacterized protein.	Motile sperm domain containing 2.	0.678
LOC103473286	mospd2	ENSPREP00000027525	ENSPREP00000002135	Ceramide transporter 1b.	Motile sperm domain containing 2.	0.715
LOC103473286	stard3	ENSPREP00000027525	ENSPREP00000016275	Ceramide transporter 1b.	StAR-related lipid transfer (START) domain containing 3.	0.567
LOC103477798	map3k5	ENSPREP00000008648	ENSPREP00000023582	Si:ch211-1i11.3.	Mitogen-activated protein kinase kinase kinase 5.	0.902
LOC103477798	mospd2	ENSPREP00000008648	ENSPREP00000002135	Si:ch211-1i11.3.	Motile sperm domain containing 2.	0.749
gpn3	mospd2	ENSPREP00000010255	ENSPREP00000002135	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Motile sperm domain containing 2.	0.758
gpn3	mpzl2	ENSPREP00000010255	ENSPREP00000010283	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	Ig-like domain-containing protein.	0.761
map3k5	LOC103477798	ENSPREP00000023582	ENSPREP00000008648	Mitogen-activated protein kinase kinase kinase 5.	Si:ch211-1i11.3.	0.902
map3k5	mospd2	ENSPREP00000023582	ENSPREP00000002135	Mitogen-activated protein kinase kinase kinase 5.	Motile sperm domain containing 2.	0.749
mospd2	CERT1	ENSPREP00000002135	ENSPREP00000004969	Motile sperm domain containing 2.	Ceramide transporter 1.	0.715
mospd2	DDX41	ENSPREP00000002135	ENSPREP00000007803	Motile sperm domain containing 2.	DEAD-box helicase 41.	0.664
mospd2	ENSPREP00000020363	ENSPREP00000002135	ENSPREP00000020363	Motile sperm domain containing 2.	GATA-type domain-containing protein.	0.763
mospd2	ENSPREP00000034346	ENSPREP00000002135	ENSPREP00000034346	Motile sperm domain containing 2.	Uncharacterized protein.	0.678
mospd2	LOC103473286	ENSPREP00000002135	ENSPREP00000027525	Motile sperm domain containing 2.	Ceramide transporter 1b.	0.715
mospd2	LOC103477798	ENSPREP00000002135	ENSPREP00000008648	Motile sperm domain containing 2.	Si:ch211-1i11.3.	0.749
mospd2	gpn3	ENSPREP00000002135	ENSPREP00000010255	Motile sperm domain containing 2.	GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.	0.758