LOC103463877 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103463877

Uncharacterized protein. (1129 aa)

Predicted Functional Partners:

sh3rf3

0.505

LOC103458631

0.489

ENSPREP00000004470

0.489

hdac8

0.489

LOC103472045

0.489

HDAC2

0.489

LOC103480422

0.467

ripk4

0.467

ENSPREP00000028517

0.463

LOC103481268

0.463

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004470	LOC103463877	ENSPREP00000004470	ENSPREP00000002160	Uncharacterized protein.	Uncharacterized protein.	0.489
ENSPREP00000028517	LOC103463877	ENSPREP00000028517	ENSPREP00000002160	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.463
ENSPREP00000028517	LOC103480422	ENSPREP00000028517	ENSPREP00000013959	ANK_REP_REGION domain-containing protein.	Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.	0.627
ENSPREP00000028517	ripk4	ENSPREP00000028517	ENSPREP00000014341	ANK_REP_REGION domain-containing protein.	Receptor-interacting serine-threonine kinase 4.	0.627
HDAC2	LOC103458631	ENSPREP00000030998	ENSPREP00000002417	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.900
HDAC2	LOC103463877	ENSPREP00000030998	ENSPREP00000002160	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Uncharacterized protein.	0.489
HDAC2	LOC103472045	ENSPREP00000030998	ENSPREP00000025070	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.901
LOC103458631	HDAC2	ENSPREP00000002417	ENSPREP00000030998	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.900
LOC103458631	LOC103463877	ENSPREP00000002417	ENSPREP00000002160	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Uncharacterized protein.	0.489
LOC103458631	LOC103472045	ENSPREP00000002417	ENSPREP00000025070	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.900
LOC103463877	ENSPREP00000004470	ENSPREP00000002160	ENSPREP00000004470	Uncharacterized protein.	Uncharacterized protein.	0.489
LOC103463877	ENSPREP00000028517	ENSPREP00000002160	ENSPREP00000028517	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.463
LOC103463877	HDAC2	ENSPREP00000002160	ENSPREP00000030998	Uncharacterized protein.	Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.489
LOC103463877	LOC103458631	ENSPREP00000002160	ENSPREP00000002417	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.489
LOC103463877	LOC103472045	ENSPREP00000002160	ENSPREP00000025070	Uncharacterized protein.	Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.489
LOC103463877	LOC103480422	ENSPREP00000002160	ENSPREP00000013959	Uncharacterized protein.	Receptor-interacting serine-threonine kinase 3; Belongs to the protein kinase superfamily.	0.467
LOC103463877	LOC103481268	ENSPREP00000002160	ENSPREP00000033015	Uncharacterized protein.	DBF4-type domain-containing protein.	0.463
LOC103463877	hdac8	ENSPREP00000002160	ENSPREP00000015717	Uncharacterized protein.	Histone deacetylase 8; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.	0.489
LOC103463877	ripk4	ENSPREP00000002160	ENSPREP00000014341	Uncharacterized protein.	Receptor-interacting serine-threonine kinase 4.	0.467
LOC103463877	sh3rf3	ENSPREP00000002160	ENSPREP00000018669	Uncharacterized protein.	SH3 domain containing ring finger 3.	0.505