STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GHITMGrowth hormone inducible transmembrane protein. (353 aa)    
Predicted Functional Partners:
ndufa11
NADH:ubiquinone oxidoreductase subunit A11.
   
   0.952
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
      
 0.734
clrn3
Clarin 3.
      
 0.732
tmbim6
Testis enhanced gene transcript (BAX inhibitor 1); Belongs to the BI1 family.
   
  
 0.723
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
   
  
 0.679
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
  
 0.660
gdap1
Ganglioside induced differentiation associated protein 1; Belongs to the GST superfamily.
      
 0.658
eif2b3
Eukaryotic translation initiation factor 2B, subunit 3 gamma.
      
 0.616
LOC103478979
Short stature homeobox.
      
 0.603
cbarp
CACN subunit beta associated regulatory protein b.
      
 0.595
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.