Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Experiments
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[Homology]
Score
LOC103463886Nocturnin. (385 aa)    
Predicted Functional Partners:
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 0.843
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 0.817
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.813
cnot8
CCR4-NOT transcription complex, subunit 8.
   
 0.753
LOC103470954
CCR4-NOT transcription complex, subunit 7.
   
 0.753
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 0.744
LOC103466190
CCR4-NOT transcription complex, subunit 2.
    
 0.744
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 0.698
pan2
PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...]
    
 
 0.696
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 0.687
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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