STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (391 aa)    
Predicted Functional Partners:
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.995
ltv1
LTV1 ribosome biogenesis factor.
   
 0.986
bysl
Bystin-like.
   
 0.984
nop14
NOP14 nucleolar protein homolog (yeast).
   
 
 0.969
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.962
tsr1
TSR1 ribosome maturation factor.
   
 0.961
rrp12
Ribosomal RNA processing 12 homolog.
   
 
 0.933
pno1
Partner of NOB1 homolog.
   
 0.932
UBE2O
Ubiquitin conjugating enzyme E2 O.
    
   0.931
rps5
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
 0.927
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.