STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000002221Uncharacterized protein. (1398 aa)    
Predicted Functional Partners:
ENSPREP00000006302
Uncharacterized protein.
 
     0.915
ENSPREP00000033600
Uncharacterized protein.
 
    
 0.695
col6a1
Collagen, type VI, alpha 1.
   
 0.584
col10a1
Collagen, type X, alpha 1b.
 
      0.446
LOC103461657
Uncharacterized protein.
   
 0.433
ENSPREP00000022184
Uncharacterized protein.
   
 0.433
col6a2
Collagen, type VI, alpha 2.
   
 0.433
thsd7b
Thrombospondin, type I, domain containing 7Ba.
    
 0.413
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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