LOC103472913 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103472913

Uncharacterized protein. (1042 aa)

Predicted Functional Partners:

POP1

0.647

armc10

0.638

LOC103478364

0.606

LOC103468804

0.503

CDC25B

0.503

plgrkt

0.497

bap1

0.460

LOC103478918

0.415

lck

0.415

hck

0.415

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC25B	LOC103472913	ENSPREP00000010131	ENSPREP00000002247	Cell division cycle 25B.	Uncharacterized protein.	0.503
LOC103468804	LOC103472913	ENSPREP00000005786	ENSPREP00000002247	Fructosamine 3 kinase related protein; Belongs to the fructosamine kinase family.	Uncharacterized protein.	0.503
LOC103468804	POP1	ENSPREP00000005786	ENSPREP00000030947	Fructosamine 3 kinase related protein; Belongs to the fructosamine kinase family.	POP1 homolog, ribonuclease P/MRP subunit.	0.584
LOC103472913	CDC25B	ENSPREP00000002247	ENSPREP00000010131	Uncharacterized protein.	Cell division cycle 25B.	0.503
LOC103472913	LOC103468804	ENSPREP00000002247	ENSPREP00000005786	Uncharacterized protein.	Fructosamine 3 kinase related protein; Belongs to the fructosamine kinase family.	0.503
LOC103472913	LOC103478364	ENSPREP00000002247	ENSPREP00000017121	Uncharacterized protein.	Si:cabz01093077.1; Belongs to the G-protein coupled receptor 1 family.	0.606
LOC103472913	LOC103478918	ENSPREP00000002247	ENSPREP00000001386	Uncharacterized protein.	Tyrosine-protein kinase.	0.415
LOC103472913	POP1	ENSPREP00000002247	ENSPREP00000030947	Uncharacterized protein.	POP1 homolog, ribonuclease P/MRP subunit.	0.647
LOC103472913	armc10	ENSPREP00000002247	ENSPREP00000024204	Uncharacterized protein.	Armadillo repeat containing 10.	0.638
LOC103472913	bap1	ENSPREP00000002247	ENSPREP00000012646	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.460
LOC103472913	hck	ENSPREP00000002247	ENSPREP00000007369	Uncharacterized protein.	Tyrosine-protein kinase.	0.415
LOC103472913	lck	ENSPREP00000002247	ENSPREP00000003459	Uncharacterized protein.	Tyrosine-protein kinase.	0.415
LOC103472913	plgrkt	ENSPREP00000002247	ENSPREP00000013361	Uncharacterized protein.	Plasminogen receptor, C-terminal lysine transmembrane protein.	0.497
LOC103478364	LOC103472913	ENSPREP00000017121	ENSPREP00000002247	Si:cabz01093077.1; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.606
LOC103478918	LOC103472913	ENSPREP00000001386	ENSPREP00000002247	Tyrosine-protein kinase.	Uncharacterized protein.	0.415
POP1	LOC103468804	ENSPREP00000030947	ENSPREP00000005786	POP1 homolog, ribonuclease P/MRP subunit.	Fructosamine 3 kinase related protein; Belongs to the fructosamine kinase family.	0.584
POP1	LOC103472913	ENSPREP00000030947	ENSPREP00000002247	POP1 homolog, ribonuclease P/MRP subunit.	Uncharacterized protein.	0.647
POP1	armc10	ENSPREP00000030947	ENSPREP00000024204	POP1 homolog, ribonuclease P/MRP subunit.	Armadillo repeat containing 10.	0.726
armc10	LOC103472913	ENSPREP00000024204	ENSPREP00000002247	Armadillo repeat containing 10.	Uncharacterized protein.	0.638
armc10	POP1	ENSPREP00000024204	ENSPREP00000030947	Armadillo repeat containing 10.	POP1 homolog, ribonuclease P/MRP subunit.	0.726