STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnlsRenalase, FAD-dependent amine oxidase. (349 aa)    
Predicted Functional Partners:
nadk
NAD kinase a.
    
  0.846
LOC103479795
NAD kinase b.
    
  0.846
chrnd
Cholinergic receptor, nicotinic, delta (muscle).
      
 0.626
prss56
Serine protease 56; Belongs to the peptidase S1 family.
      
 0.566
arhgef39
Rho guanine nucleotide exchange factor (GEF) 39.
      
 0.521
hus1
Checkpoint protein; Belongs to the HUS1 family.
      
 0.477
mfsd6l
Major facilitator superfamily domain containing 6-like.
      
 0.473
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.