STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464941Keratin 4; Belongs to the intermediate filament family. (474 aa)    
Predicted Functional Partners:
LOC103479563
Uncharacterized protein.
   
 
 0.808
LOC103464197
Uncharacterized protein; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 
 0.808
LOC103464198
Si:ch73-74h11.1; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 
 0.808
LOC103468924
Glial fibrillary acidic protein; Belongs to the intermediate filament family.
   
   0.789
LOC103466878
Keratin 5; Belongs to the intermediate filament family.
   
  0.729
bag3
BCL2 associated athanogene 3.
    
 0.711
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
      
 0.588
ENSPREP00000020277
RBR-type E3 ubiquitin transferase.
    
 
 0.582
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  0.578
keratin-3
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
0.564
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.