STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103464941Keratin 4; Belongs to the intermediate filament family. (474 aa)    
Predicted Functional Partners:
bag3
BCL2 associated athanogene 3.
    
 0.594
rps27a
Ribosomal protein S27a.
    
  0.537
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
 0.517
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  0.517
keratin-3
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
0.513
LOC103466880
Keratin 18a, tandem duplicate 1; Belongs to the intermediate filament family.
  
0.512
keratin
Keratin 15; Belongs to the intermediate filament family.
  
0.510
LOC103466878
Keratin 5; Belongs to the intermediate filament family.
  
0.504
trap1
TNF receptor-associated protein 1.
    
 0.503
hsp90ab1
Heat shock protein 90, alpha (cytosolic), class B member 1.
    
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.