STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ncbp3Nuclear cap binding subunit 3. (667 aa)    
Predicted Functional Partners:
NCBP1
Nuclear cap binding protein subunit 1.
    
 
 0.983
LOC103469127
Aly/REF export factor.
    
 
 0.965
chtop
Chromatin target of PRMT1a.
   
 
 0.951
thoc1
THO complex 1.
   
 
 0.948
pnn
Pinin, desmosome associated protein.
   
   0.945
snip1
Smad nuclear interacting protein.
    
   0.944
thoc7
THO complex 7.
    
 
 0.944
thoc2
THO complex 2.
   
 
 0.942
thoc5
THO complex 5.
   
 
 0.934
thoc6
THO complex 6.
    
 
 0.932
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.