LOC103464605 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103464605

Solute carrier family 26 member 6, like. (824 aa)

Predicted Functional Partners:

trmu

0.516

mre11

0.510

LOC103473676

0.508

ENSPREP00000020629

0.498

ENSPREP00000015043

0.490

kcnk10

0.472

LOC103481558

0.472

LOC103458205

0.472

kcnk1

0.472

ND4

0.470

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000015043	LOC103464605	ENSPREP00000015043	ENSPREP00000002293	Uncharacterized protein; Belongs to the complex I LYR family.	Solute carrier family 26 member 6, like.	0.490
ENSPREP00000015043	ND4	ENSPREP00000015043	ENSPREP00000000011	Uncharacterized protein; Belongs to the complex I LYR family.	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.615
ENSPREP00000015043	mre11	ENSPREP00000015043	ENSPREP00000033509	Uncharacterized protein; Belongs to the complex I LYR family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.851
ENSPREP00000020629	LOC103464605	ENSPREP00000020629	ENSPREP00000002293	COesterase domain-containing protein.	Solute carrier family 26 member 6, like.	0.498
LOC103458205	LOC103464605	ENSPREP00000011910	ENSPREP00000002293	Potassium channel subfamily K member.	Solute carrier family 26 member 6, like.	0.472
LOC103458205	LOC103481558	ENSPREP00000011910	ENSPREP00000008547	Potassium channel subfamily K member.	Potassium channel subfamily K member.	0.560
LOC103458205	kcnk1	ENSPREP00000011910	ENSPREP00000033613	Potassium channel subfamily K member.	Potassium channel subfamily K member.	0.616
LOC103458205	kcnk10	ENSPREP00000011910	ENSPREP00000007312	Potassium channel subfamily K member.	Potassium channel, subfamily K, member 10b; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.477
LOC103464605	ENSPREP00000015043	ENSPREP00000002293	ENSPREP00000015043	Solute carrier family 26 member 6, like.	Uncharacterized protein; Belongs to the complex I LYR family.	0.490
LOC103464605	ENSPREP00000020629	ENSPREP00000002293	ENSPREP00000020629	Solute carrier family 26 member 6, like.	COesterase domain-containing protein.	0.498
LOC103464605	LOC103458205	ENSPREP00000002293	ENSPREP00000011910	Solute carrier family 26 member 6, like.	Potassium channel subfamily K member.	0.472
LOC103464605	LOC103473676	ENSPREP00000002293	ENSPREP00000015163	Solute carrier family 26 member 6, like.	Solute carrier family 2 member 11, like; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	0.508
LOC103464605	LOC103481558	ENSPREP00000002293	ENSPREP00000008547	Solute carrier family 26 member 6, like.	Potassium channel subfamily K member.	0.472
LOC103464605	ND4	ENSPREP00000002293	ENSPREP00000000011	Solute carrier family 26 member 6, like.	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.470
LOC103464605	kcnk1	ENSPREP00000002293	ENSPREP00000033613	Solute carrier family 26 member 6, like.	Potassium channel subfamily K member.	0.472
LOC103464605	kcnk10	ENSPREP00000002293	ENSPREP00000007312	Solute carrier family 26 member 6, like.	Potassium channel, subfamily K, member 10b; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.472
LOC103464605	mre11	ENSPREP00000002293	ENSPREP00000033509	Solute carrier family 26 member 6, like.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.510
LOC103464605	trmu	ENSPREP00000002293	ENSPREP00000011756	Solute carrier family 26 member 6, like.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.516
LOC103473676	LOC103464605	ENSPREP00000015163	ENSPREP00000002293	Solute carrier family 2 member 11, like; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.	Solute carrier family 26 member 6, like.	0.508
LOC103481558	LOC103458205	ENSPREP00000008547	ENSPREP00000011910	Potassium channel subfamily K member.	Potassium channel subfamily K member.	0.560