Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ttlTubulin tyrosine ligase. (408 aa)    
Predicted Functional Partners:
edc3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
    
 
 0.859
svbp
Small vasohibin binding protein.
      
 0.796
LRRC49
Leucine rich repeat containing 49.
   
 0.787
tpgs1
Uncharacterized protein.
    
 0.785
nicn1
Nicolin 1.
   
 0.784
tpgs2
Tubulin polyglutamylase complex subunit 2.
   
  0.761
clg6h11orf49
Zgc:92873.
    
 
 0.700
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
  
 0.680
tbc1d19
TBC1 domain family, member 19.
   
 
 0.672
vash2
Vasohibin 2.
      
 0.666
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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