STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttlTubulin tyrosine ligase. (408 aa)    
Predicted Functional Partners:
edc3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
    
 
 0.909
LRRC49
Leucine rich repeat containing 49.
   
 0.700
tpgs2
Tubulin polyglutamylase complex subunit 2.
   
 0.663
nicn1
Nicolin 1.
   
 0.652
tpgs1
Uncharacterized protein.
    
 0.650
csad
Cysteine sulfinic acid decarboxylase.
      
 0.647
kif7
Kinesin family member 7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.631
dcp2
Decapping mRNA 2.
    
 
 0.619
Snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
  
 0.560
dcp1b
Decapping mRNA 1B.
    
 
 0.557
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.