Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
srrdSRR1 domain containing. (276 aa)    
Predicted Functional Partners:
hps4
HPS4 biogenesis of lysosomal organelles complex 3 subunit 2.
      
 0.709
asphd1
Asp_Arg_Hydrox domain-containing protein.
      
 0.654
asphd2
Aspartate beta-hydroxylase domain containing 2.
      
 0.654
dus4l
tRNA-dihydrouridine synthase; Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs; Belongs to the dus family.
   
  
 0.606
ENSPREP00000003193
PWWP domain-containing protein.
      
 0.595
rrp8
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
      
 0.585
wdr26
WD repeat domain 26b.
    
   0.567
rmnd5b
Required for meiotic nuclear division 5 homolog B.
    
   0.564
mkln1
Muskelin 1, intracellular mediator containing kelch motifs.
    
   0.544
crybb1
Crystallin, beta B1; Belongs to the beta/gamma-crystallin family.
      
 0.531
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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