STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103458630Transmembrane protein 54a. (238 aa)    
Predicted Functional Partners:
Unc79
Uncharacterized protein.
    
 0.654
LOC103476825
Discs, large homolog 5a (Drosophila); Belongs to the MAGUK family.
    
 
 0.513
bco1
Beta-carotene oxygenase 1.
     
 0.501
ENSPREP00000033084
Beta-carotene oxygenase 1, like.
     
 0.501
LOC103461037
RAN binding protein 2.
    
  0.491
uaca
Uveal autoantigen with coiled-coil domains and ankyrin repeats b.
    
 0.486
plch1
Phosphoinositide phospholipase C.
      
 0.469
zcchc24
CCHC-type domain-containing protein.
      
 0.461
LOC103476828
Zinc finger, CCHC domain containing 24.
      
 0.461
rbbp5
Retinoblastoma binding protein 5.
    
 0.423
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.