STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103462554Calbindin 2b. (271 aa)    
Predicted Functional Partners:
LOC103468547
Parvalbumin 6; Belongs to the parvalbumin family.
      
 0.800
LOC103475296
Somatostatin.
   
  
 0.730
sdf4
Stromal cell derived factor 4.
      
 0.729
pvalb
Parvalbumin 7; Belongs to the parvalbumin family.
      
 0.670
psme3ip1
Family with sequence similarity 192 member A.
      
 0.656
nts
Neurotensin.
      
 0.652
LOC103478031
Transient receptor potential cation channel, subfamily V, member 6; Belongs to the transient receptor (TC 1.A.4) family.
    
 0.638
LOC103478176
Protein S100; Belongs to the S-100 family.
    
 0.629
nf1
Neurofibromin 1b.
    
 0.610
dcx
Uncharacterized protein.
     
 0.600
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.