STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478928Collagen, type XV, alpha 1b. (1377 aa)    
Predicted Functional Partners:
LOC103479097
Uncharacterized protein.
    
 
 0.624
LOC103456615
C1q and TNF related 9.
  
 
 
0.483
LOC103473505
Fibrillar collagen NC1 domain-containing protein.
  
 
0.463
LOC103467158
Uncharacterized protein.
   
 0.461
LOC103467157
Matrix metallopeptidase 9.
   
 0.461
ENSPREP00000021359
Matrix metallopeptidase 9.
   
 0.461
MMP9
Matrix metallopeptidase 9.
   
 0.461
hspg2
Heparan sulfate proteoglycan 2.
   
 
 0.457
ENSPREP00000022184
Uncharacterized protein.
  
 0.456
LOC108166264
Uncharacterized protein.
  
 
0.454
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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