STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc36Uncharacterized protein. (429 aa)    
Predicted Functional Partners:
rrp36
Ribosomal RNA processing 36.
      
 0.772
LOC103464606
Kelch repeat and BTB (POZ) domain containing 12.
      
 0.741
kcng3
Potassium voltage-gated channel, subfamily G, member 3; Belongs to the potassium channel family.
      
 0.724
trappc6a
Trafficking protein particle complex 6b-like.
      
 0.677
fkbp6
Peptidylprolyl isomerase.
    
   0.656
xpc
Xeroderma pigmentosum, complementation group C.
      
 0.651
rec114
REC114 meiotic recombination protein.
      
 0.635
prr35
Si:ch211-248l17.3.
      
 0.613
tmem204
Transmembrane protein 204.
      
 0.609
TMEM43
Uncharacterized protein.
      
 0.602
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.