STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lumLumican. (342 aa)    
Predicted Functional Partners:
LOC103459210
Decorin; May affect the rate of fibrils formation.
  
  
0.943
GRIN3A
Glutamate ionotropic receptor NMDA type subunit 3A; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
    
 0.926
htr5a
5-hydroxytryptamine (serotonin) receptor 5A, genome duplicate b.
      
 0.921
spice1
Spindle and centriole associated protein 1.
      
 0.916
ptprg
Carbonic anhydrase XVI b.
    
 0.913
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
   
 
 0.907
LOC103476708
SPARC-like 2.
   
 
 0.907
ogn
Osteoglycin, paralog a.
   
 
 0.790
ENSPREP00000023466
Uncharacterized protein.
   
 
 0.790
LOC103465962
SPARC-like 1.
   
 
 0.785
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.