g3bp2 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

g3bp2

Zgc:56304. (506 aa)

Predicted Functional Partners:

usp10

0.930

caprin1

0.891

LOC103462434

0.891

atxn2

0.859

LOC103481378

0.854

nufip2

0.846

rack1

0.776

ENSPREP00000013186

0.770

ddx6

0.770

fam98a

0.759

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000013186	LOC103481378	ENSPREP00000013186	ENSPREP00000034095	Uncharacterized protein.	LsmAD domain-containing protein.	0.946
ENSPREP00000013186	atxn2	ENSPREP00000013186	ENSPREP00000022113	Uncharacterized protein.	Ataxin 2.	0.939
ENSPREP00000013186	ddx6	ENSPREP00000013186	ENSPREP00000023831	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.901
ENSPREP00000013186	g3bp2	ENSPREP00000013186	ENSPREP00000002415	Uncharacterized protein.	Zgc:56304.	0.770
ENSPREP00000013186	nufip2	ENSPREP00000013186	ENSPREP00000001106	Uncharacterized protein.	Nuclear FMR1 interacting protein 2.	0.928
LOC103462434	LOC103481378	ENSPREP00000033928	ENSPREP00000034095	Cell cycle associated protein 1a.	LsmAD domain-containing protein.	0.501
LOC103462434	atxn2	ENSPREP00000033928	ENSPREP00000022113	Cell cycle associated protein 1a.	Ataxin 2.	0.486
LOC103462434	g3bp2	ENSPREP00000033928	ENSPREP00000002415	Cell cycle associated protein 1a.	Zgc:56304.	0.891
LOC103462434	nufip2	ENSPREP00000033928	ENSPREP00000001106	Cell cycle associated protein 1a.	Nuclear FMR1 interacting protein 2.	0.782
LOC103462434	usp10	ENSPREP00000033928	ENSPREP00000034286	Cell cycle associated protein 1a.	Ubiquitin carboxyl-terminal hydrolase.	0.807
LOC103481378	ENSPREP00000013186	ENSPREP00000034095	ENSPREP00000013186	LsmAD domain-containing protein.	Uncharacterized protein.	0.946
LOC103481378	LOC103462434	ENSPREP00000034095	ENSPREP00000033928	LsmAD domain-containing protein.	Cell cycle associated protein 1a.	0.501
LOC103481378	atxn2	ENSPREP00000034095	ENSPREP00000022113	LsmAD domain-containing protein.	Ataxin 2.	0.836
LOC103481378	caprin1	ENSPREP00000034095	ENSPREP00000023944	LsmAD domain-containing protein.	Cell cycle associated protein 1b.	0.501
LOC103481378	ddx6	ENSPREP00000034095	ENSPREP00000023831	LsmAD domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.	0.946
LOC103481378	fam98a	ENSPREP00000034095	ENSPREP00000026308	LsmAD domain-containing protein.	Family with sequence similarity 98 member A.	0.954
LOC103481378	g3bp2	ENSPREP00000034095	ENSPREP00000002415	LsmAD domain-containing protein.	Zgc:56304.	0.854
LOC103481378	nufip2	ENSPREP00000034095	ENSPREP00000001106	LsmAD domain-containing protein.	Nuclear FMR1 interacting protein 2.	0.982
LOC103481378	rack1	ENSPREP00000034095	ENSPREP00000005808	LsmAD domain-containing protein.	Receptor for activated C kinase 1.	0.582
LOC103481378	usp10	ENSPREP00000034095	ENSPREP00000034286	LsmAD domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.438