STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000002421E2F_TDP domain-containing protein. (150 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
  
 0.960
ENSPREP00000023356
Retinoblastoma-like 1 (p107).
   
 0.959
LOC103466787
Retinoblastoma-like 2 (p130).
   
 0.959
ENSPREP00000020452
E2F_TDP domain-containing protein.
  
  
 
0.911
e2f4
E2F transcription factor 4.
  
  
 
0.908
ENSPREP00000032744
Retinoblastoma 1.
   
 0.860
SMAD3
Mothers against decapentaplegic homolog.
    
 0.711
LOC103466539
Mothers against decapentaplegic homolog.
    
 0.711
LOC103473773
Mothers against decapentaplegic homolog.
    
 0.711
LOC103477474
Mothers against decapentaplegic homolog.
    
 0.711
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.