Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vwc2Von Willebrand factor C domain containing 2. (299 aa)    
Predicted Functional Partners:
LOC103464606
Kelch repeat and BTB (POZ) domain containing 12.
      
 0.689
kcng3
Potassium voltage-gated channel, subfamily G, member 3; Belongs to the potassium channel family.
      
 0.659
TMEM43
Uncharacterized protein.
      
 0.624
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
      
 0.605
xpc
Xeroderma pigmentosum, complementation group C.
      
 0.593
pkdcc
Protein kinase domain containing, cytoplasmic b.
     
 0.593
klhdc8b
Kelch domain containing 8B.
      
 0.591
rrp36
Ribosomal RNA processing 36.
      
 0.590
trappc6a
Trafficking protein particle complex 6b-like.
      
 0.588
RAB11FIP3
RAB11 family interacting protein 3.
      
 0.585
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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