STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103475867Lysine (K)-specific demethylase 6B, b. (1729 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 0.933
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.933
eed
Embryonic ectoderm development.
   
 0.918
pagr1
PAXIP1 associated glutamate-rich protein 1.
    
 0.904
atp5f1c
ATP synthase subunit gamma.
  
 0.900
mdc1
Uncharacterized protein.
  
 
 0.895
paxip1
PAX interacting (with transcription-activation domain) protein 1.
    
 0.874
ATP6
ATP synthase subunit a.
  
 0.870
atp5f1d
ATP synthase F1 subunit delta.
  
 0.868
LOC103479582
Lysine (K)-specific methyltransferase 2Cb.
   
 0.863
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.