Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103459210Decorin; May affect the rate of fibrils formation. (360 aa)    
Predicted Functional Partners:
LOC103475119
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.991
ccdc80
Coiled-coil domain containing 80.
   
 0.960
tgfb2
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.956
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.946
lum
Lumican.
  
  
0.943
TGFB3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.942
col6a1
Collagen, type VI, alpha 1.
   
 0.776
LOC103465962
SPARC-like 1.
   
 
 0.760
sparc
Secreted protein, acidic, cysteine-rich (osteonectin).
   
 
 0.760
LOC103476708
SPARC-like 2.
   
 
 0.760
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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