LOC103472224 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103472224

Insulin-like growth factor 2 mRNA binding protein 3. (608 aa)

Predicted Functional Partners:

ELAVL2

0.697

ythdf2

0.657

mkrn2

0.638

ilf2

0.617

LOC103463278

0.605

LOC103458435

0.605

stau1

0.554

stau2

0.554

LOC103457646

0.545

mettl14

0.535

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ELAVL2	LOC103472224	ENSPREP00000025412	ENSPREP00000002455	ELAV-like protein; Belongs to the RRM elav family.	Insulin-like growth factor 2 mRNA binding protein 3.	0.697
ELAVL2	ilf2	ENSPREP00000025412	ENSPREP00000029909	ELAV-like protein; Belongs to the RRM elav family.	Interleukin enhancer binding factor 2.	0.538
LOC103457646	LOC103472224	ENSPREP00000009012	ENSPREP00000002455	Lin-28 homolog B (C. elegans).	Insulin-like growth factor 2 mRNA binding protein 3.	0.545
LOC103457646	mkrn2	ENSPREP00000009012	ENSPREP00000031284	Lin-28 homolog B (C. elegans).	Makorin, ring finger protein, 2.	0.431
LOC103458435	LOC103472224	ENSPREP00000016350	ENSPREP00000002455	ELAV-like protein; Belongs to the RRM elav family.	Insulin-like growth factor 2 mRNA binding protein 3.	0.605
LOC103458435	ilf2	ENSPREP00000016350	ENSPREP00000029909	ELAV-like protein; Belongs to the RRM elav family.	Interleukin enhancer binding factor 2.	0.829
LOC103458435	stau1	ENSPREP00000016350	ENSPREP00000004951	ELAV-like protein; Belongs to the RRM elav family.	Staufen double-stranded RNA binding protein 1.	0.496
LOC103458435	stau2	ENSPREP00000016350	ENSPREP00000026316	ELAV-like protein; Belongs to the RRM elav family.	Staufen double-stranded RNA binding protein 2.	0.496
LOC103463278	LOC103472224	ENSPREP00000008615	ENSPREP00000002455	ELAV-like protein; Belongs to the RRM elav family.	Insulin-like growth factor 2 mRNA binding protein 3.	0.605
LOC103463278	ilf2	ENSPREP00000008615	ENSPREP00000029909	ELAV-like protein; Belongs to the RRM elav family.	Interleukin enhancer binding factor 2.	0.829
LOC103463278	stau1	ENSPREP00000008615	ENSPREP00000004951	ELAV-like protein; Belongs to the RRM elav family.	Staufen double-stranded RNA binding protein 1.	0.496
LOC103463278	stau2	ENSPREP00000008615	ENSPREP00000026316	ELAV-like protein; Belongs to the RRM elav family.	Staufen double-stranded RNA binding protein 2.	0.496
LOC103472224	ELAVL2	ENSPREP00000002455	ENSPREP00000025412	Insulin-like growth factor 2 mRNA binding protein 3.	ELAV-like protein; Belongs to the RRM elav family.	0.697
LOC103472224	LOC103457646	ENSPREP00000002455	ENSPREP00000009012	Insulin-like growth factor 2 mRNA binding protein 3.	Lin-28 homolog B (C. elegans).	0.545
LOC103472224	LOC103458435	ENSPREP00000002455	ENSPREP00000016350	Insulin-like growth factor 2 mRNA binding protein 3.	ELAV-like protein; Belongs to the RRM elav family.	0.605
LOC103472224	LOC103463278	ENSPREP00000002455	ENSPREP00000008615	Insulin-like growth factor 2 mRNA binding protein 3.	ELAV-like protein; Belongs to the RRM elav family.	0.605
LOC103472224	ilf2	ENSPREP00000002455	ENSPREP00000029909	Insulin-like growth factor 2 mRNA binding protein 3.	Interleukin enhancer binding factor 2.	0.617
LOC103472224	mettl14	ENSPREP00000002455	ENSPREP00000013372	Insulin-like growth factor 2 mRNA binding protein 3.	Methyltransferase like 14; Belongs to the MT-A70-like family.	0.535
LOC103472224	mkrn2	ENSPREP00000002455	ENSPREP00000031284	Insulin-like growth factor 2 mRNA binding protein 3.	Makorin, ring finger protein, 2.	0.638
LOC103472224	stau1	ENSPREP00000002455	ENSPREP00000004951	Insulin-like growth factor 2 mRNA binding protein 3.	Staufen double-stranded RNA binding protein 1.	0.554